Scaffold Ga0214921_10001858

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10001858
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35337
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (46.43%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004256	Metagenome	446	Y
F019784	Metagenome	227	Y
F024484	Metagenome / Metatranscriptome	205	Y
F029568	Metagenome / Metatranscriptome	188	Y
F043882	Metagenome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000185813	F024484	N/A	MITQTKFTVDTTLFADACNHLPKDEMKTPINYPTGNFFYDPWVLKDEYKGTVWEILYNSLPVTKGEARIIILDPGQAYQSHADIDDRYHLNILGSKSYLIDLENNQMYFLDANGIWYDMDAGQIHTATNFGRTARIQLVIRKLLLNNVLKDPLPVTIQTTLKNLDQARFIFDNTISPWLNFANKRKYINNFSYTNNQASFNIEESVLYILKNILPEEFVLV
Ga0214921_1000185819	F004256	N/A	MNTQYNYYYNNVPGQEPSRNNLIYTSLMSDDQKTFVQWYFNDTEYHQGKNEVVDPNKMEEKWLREVNYLTQMRNRFPELVPKIIKIELDNKKIFLEVDGPDFWNLAQCDVANYDKVLPDWQEQMLNIIQIHKNLGFYKFSMHPSSYFVVDGKLKSINYFFTYNKNEGPISIADHASHIYSTRQEIMREQVEAMGLDWYKPQPLDKLQELCFESFRTNYPASFIEKAKRIYEQE
Ga0214921_1000185822	F029568	N/A	MYRYDLSNTEIKIYYETCPEFEAIREICLQEDNWLRKNYIKENLIVEQHTGYGVVYQKSSGKPMVMGGVFNDGRYPKNVAKQINRLYTFPEFRMKHTDMTDGFRVTCSLIDALETVNDFDVYLITMQNRPRGGKHWWDTWVHHMDTASNGKWTLGTGYIQTCNAQVQKCWQNYVYYETKQGAFDKWAPIIINDEGWAAMPEGA
Ga0214921_1000185824	F043882	N/A	MGTFYIPKPELSYIHVPRTGMAMKKIISDWLKPNFNVIDEDPWMINHPNLQMVREHIPTGKTLSIVRNPWQRVYSFYRKISTEGYWLDWNGKTLLDLKPINEWVADYCDPTVPFEFPRWFNKSTNQIEFLNYNGKWVDFIIKAEDLEIGFKPVQEYLECKIPLPDISGYDHWEFKKYFNDASIRAIATVHERDIDFFKYSI
Ga0214921_1000185838	F019784	AGAAGG	MINLNIFELNKIKKICEEVGTEYFTLEQTNASGIGSVLTFTYETEIADHPATISIEVRGVDNW